rs247217251 SNP Detail

Summary

• ID
  rs247217251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58111744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTCCTTGA GGTTACTAGG CCGACTGTCT
  TAATGGGTAT CCCTCTCGTG AGACACCATA ATGGGTTTTG CTAACTGAAT TACCTGGGAT
  CTGACTATAG GATAAGTTTC CCTGTTCTAA TTGTTTGGAA TGCCATGTTT GACACATGCT
  Y
  ACCTTAGCGC CAACGACGAG GGGCCTCTTG GTCTACTCCT GTCTCTTTTT GTCTCTTTTC
  GTCCTTGACT CTGGAGATGG AGTATCTCTT AGGGAATGGG GAAGAGCTTG TCTTTGGCTA
  TTGTCTGAAA AACGTGGCCA GCAGAGGCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323688636	CHEV_11_58034420	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247217251					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58111744 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	mRNA-UTR
Tssr101708	transcription start site region 101708	728 bp downstream
Tssr101709	transcription start site region 101709	408 bp downstream
Tssr101710	transcription start site region 101710	390 bp downstream
Tssr101711	transcription start site region 101711	204 bp downstream
Tssr101712	transcription start site region 101712	163 bp downstream
Tssr101713	transcription start site region 101713	131 bp upstream
Tssr101714	transcription start site region 101714	180 bp upstream