rs247219546 SNP Detail

Summary

• ID
  rs247219546
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5828222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGC CGCATCCCGC CAATCTCTGC
  K
  CGCCCGTCCC GCCCATCGGC GCATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323549257	CHEV_11_5778225	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247219546					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5828222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	within coordinates
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	within coordinates
Rr442177	regulatory region 442177	within coordinates
Rr442178	regulatory region 442178	60 bp proximal
Rr442179	regulatory region 442179	1576 bp proximal
Rr442180	regulatory region 442180	1887 bp proximal
Tssr100216	transcription start site region 100216	146 bp upstream
Tssr106653	transcription start site region 106653	1313 bp upstream
Tssr106654	transcription start site region 106654	within coordinates
Tssr106655	transcription start site region 106655	29 bp downstream