rs247219794 SNP Detail

Summary

• ID
  rs247219794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44588716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCTTTAT TGTTCAGGAT
  CATTTATAGA CCAGGTGCTG TGTATACTAG TGGAAGTCTA AGTAACACTG GATTTAAAGA
  CCTAGGAATT AGTGTTTGAT TCAGCTGGGG TTAGGGTTAA GTGGTATTGG GCAGTTCTTG
  GTATTGCATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG CGCACATGCC
  Y
  ATGCCTATAG GCACACAGAT GGGGTTGTGT GTGTGTATAC ACTTGTGCTT GCTTGGATGG
  AAGTGTGTAC TGATAGCCCC ATCATCTGTC AGAGTTACTT GAGTTCTTCT GTTTAGAACT
  CTGTAGAATG TGGGAAACGA CTTATGGGCT GTTTGTAAGA ATTCTGAAAC CCAGCAAGTT
  AAGAAATGAG CAATTTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PWK/PhJ	RF/J	ST/bJ	ZALENDE/EiJ
ss383202897	MGP_WTSI_11_44511391	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PWK/PhJ	RF/J	ST/bJ	ZALENDE/EiJ
rs247219794					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383202897	MGP_WTSI_11_44511391	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44588716 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445670	regulatory region 445670	372 bp distal
Tssr101056	transcription start site region 101056	1137 bp upstream