rs247223867 SNP Detail

Summary

• ID
  rs247223867
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93256923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATAGAGC TATATCAGCT
  CGGCGTTCTC TTCCGCCTTG CCGGAGCTCT GGACCGCACC GCGTGCTAGG CTGGCCACGC
  TCGACCGGAG CGGTCCCCAG CGAGCTCGCA CAGAGCGCCC TCGCGCGGAG ATCTGGGGAA
  GGGTTCGAGG ATGAGATGAT GGAGGAAGAG TCCAGTCCTC TCCGACCTCG CCCCCGCCCC
  T
  CACCTCCCCT ACCCCTTGAT CGCTAGAGAA ATTTCTAAGG CCAGTGAGAT GGTGTATGGT
  GACATTAGTC TGTATCCGCG TGAATGTAGC CTGGAAGCCG GGTGTCCACA GACTTTTTTT
  TTTCTGAAGC TGAATCTTGG AAACCCTCCA TTAGACATCT TATTTTTCCT CTTGTGTTAA
  AAATAAGTGA TGTTTAATGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404079094	MGP_WTSI_X_91458656	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247223867					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404079094	MGP_WTSI_X_91458656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93256923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22831	CpG island 22831	22 bp distal
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	666 bp upstream
Rr395367	regulatory region 395367	within coordinates
Rr692435	regulatory region 692435	118 bp distal
Rr692436	regulatory region 692436	68 bp distal
Rr692437	regulatory region 692437	437 bp proximal
Tssr163780	transcription start site region 163780	655 bp upstream
Tssr163781	transcription start site region 163781	621 bp upstream
Tssr163782	transcription start site region 163782	395 bp upstream