rs247230601 SNP Detail

Summary

• ID
  rs247230601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCTGCT AAGATGGCAG
  TCACCACATG GAGTGTCCAG TGCACCTCTA GTGCAAGAGC TGGACTTGTA TACTGAGGCA
  AGGGTAAATA TGTCGGGCTT TTCCTCAACA ATGCTGTCTT CAAACAGGCT TTCACCCTCC
  GCTAAGACTG GGGGCAGTCT GAAAACAACA GTTACAGCCA AATGCACAGC CTTCCTCCTC
  S
  ATCCCTGGCC CATCTAGCTC CAAAGGCTGA TGAATATGGA TTGCTGGAGA GCAGCCATTT
  GCTTACTCAG GTTAGCCCTG CATCTGAGCC TTGACCTAAG ATATGGAGTG TAGATTTGAC
  TCTTTTAGGG GGCTTTCTGC TACCAATACA TCTACCTTGA AAACTTGGAA TAGAAAACAC
  TTATTGATCA AAGAGGTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216574	MGP_WTSI_1_166369988	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247230601					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216574	MGP_WTSI_1_166369988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267426 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	Intron
Tssr9784	transcription start site region 9784	1350 bp downstream
Tssr14733	transcription start site region 14733	1998 bp upstream
Tssr14734	transcription start site region 14734	1953 bp upstream
Tssr14735	transcription start site region 14735	1899 bp upstream
Tssr14736	transcription start site region 14736	1858 bp upstream
Tssr14737	transcription start site region 14737	1798 bp upstream
Tssr14738	transcription start site region 14738	1662 bp upstream
Tssr14739	transcription start site region 14739	1478 bp upstream
Tssr14740	transcription start site region 14740	1437 bp upstream
Tssr14741	transcription start site region 14741	1360 bp upstream
Tssr14742	transcription start site region 14742	1318 bp upstream
Tssr14743	transcription start site region 14743	1701 bp downstream
Tssr14744	transcription start site region 14744	1750 bp downstream