rs247241313 SNP Detail

Summary

• ID
  rs247241313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102528342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGGTCA CAGATTATGC
  AAGCCAGTGT ATCATTTTTG TGGGGATGCT AGAGAGAATC ATCAAATTAA AGAGTTAAAT
  TTAGTCTCTG TGTTTTACTT AGTCCCAATT CTTGCAAACC TCATCATTCT TTCTCACACC
  GTGTACATCA AGGTATGTCA GGTTTCGGGG ACACTTTTTA GTCTTATCAC AAGAAAGCAT
  R
  AAGGGATATG TGCTAAAACT CAGTTCCTGG GCTGGAGAGA TAGCTCAGTG GTTAGGAGTG
  CTGACTGCTC TTCCAGAGGG CCTGAGTTCA ATTCTCAACA ACTTCGTAGT GGCTCACAGT
  CATCTGTAGT GGGATCCGAT ATCTAACCTC TTCTGATGTA TCTGAACAGT GACCGACAGT
  GTACTCACAT TAAATAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404206115	MGP_WTSI_X_100680075	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247241313					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206115	MGP_WTSI_X_100680075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102528342 () rs orientation: forward

Symbol	Name	Function Class
Rr693005	regulatory region 693005	1493 bp distal
Rr693006	regulatory region 693006	1355 bp distal
Rr693007	regulatory region 693007	258 bp distal
Rr693008	regulatory region 693008	487 bp distal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr163955	transcription start site region 163955	1942 bp upstream
Tssr163956	transcription start site region 163956	1887 bp upstream
Tssr163957	transcription start site region 163957	1694 bp upstream
Tssr163958	transcription start site region 163958	1511 bp upstream
Tssr163959	transcription start site region 163959	1484 bp upstream
Xist	inactive X specific transcripts	1503 bp upstream