rs247241554 SNP Detail

Summary

• ID
  rs247241554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCGTTTC GGCGAAGGGC
  TGCTTGAGGC AGAGCTGGCT TCACTGTGCC CTGCTGCGAT CGCCCCCTAC TATCTGCGCG
  CCCCCAGTGT GGCGTTACCC ACAGCCCAGG TGCCAGGCCT AGGGAGAGGG CCAATCCAAC
  TACTAACAAG ACTGGGGGCC AGGAGGGGGG TCTAACCCCG GGCCGGGGGT GCGGGAATGT
  Y
  TGTTGATTTT TAACTTAGAG GAGAATGTCA CCCCTCAGTG GGGCCATTGG GTGTCCCTTG
  AGTGCGGTAT TCTGAGCCCC TCCCCCCCCC CCCCCCCGTT ACTGATCTTC TGAGGGGGTG
  AAGGGTGGGG CAAGTGAGCC GGGAATCTGG GGGAAAGGAC AAGTGAGTCC CGACGGGCTG
  TAATGTTCCT AGGGTTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370910090	MGP_WTSI_7_31338643	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247241554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370910090	MGP_WTSI_7_31338643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	973 bp distal
Cpgi18809	CpG island 18809	90 bp distal
Cpgi18810	CpG island 18810	602 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1817 bp downstream
Mir9769	microRNA 9769	720 bp downstream
Proser3	proline and serine rich 3	1325 bp upstream
Rr400242	regulatory region 400242	1132 bp downstream
Rr644846	regulatory region 644846	1368 bp distal
Rr644847	regulatory region 644847	1933 bp distal
Rr644848	regulatory region 644848	862 bp distal
Rr644849	regulatory region 644849	346 bp distal
Rr644850	regulatory region 644850	123 bp distal
Tssr65779	transcription start site region 65779	1060 bp downstream
Tssr65780	transcription start site region 65780	352 bp downstream
Tssr65781	transcription start site region 65781	315 bp downstream
Tssr65782	transcription start site region 65782	1148 bp upstream
Tssr65783	transcription start site region 65783	1223 bp upstream
Tssr65784	transcription start site region 65784	1247 bp upstream
Tssr65785	transcription start site region 65785	1299 bp upstream
Tssr65786	transcription start site region 65786	1317 bp upstream
Tssr65787	transcription start site region 65787	1411 bp upstream
Tssr71787	transcription start site region 71787	1308 bp upstream
Tssr71788	transcription start site region 71788	1249 bp upstream
Tssr71789	transcription start site region 71789	1041 bp downstream
Tssr71790	transcription start site region 71790	1153 bp downstream