rs247260223 SNP Detail

Summary

• ID
  rs247260223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52295289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTGAGA GTTGGGGTAG
  AGGAGATGAA ATGTTAGTAG GGGATTGAAG ACCAGGAGCG AGATAAAGAG GAGGCTCTAA
  ATGTCAGCCT TGCATTTCCG TCAAGTCTAA GTGCCTTGGT GTTTCCTTAA AGCTAGAGAT
  GGGCTGAGTA GGGTGAGTCA GGAGGATTGG TATGCAGGAA AGAAAAATGA CGGCTTTCTT
  Y
  TCCGGTAAAC TGCCTGCATG CTCCGGAGAA GCAATTTTGA GTTTTGCCTT TAAATCTTTG
  TCAGCTATGT ATTTGAGTTT GGGGTTTGGT TGGGGTAATA GTAACCTCTG ACTACTTTAT
  TCTCTTTTAC AGCTAGCAAG GAGGATGACT CCCCAGGAGT CTGTCATCTG AAGTGATAAT
  TTGCCCTATA GGGTAAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380400476	MGP_WTSI_10_52138999	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247260223					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380400476	MGP_WTSI_10_52138999	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52295289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1536	CpG island 1536	795 bp distal
Nus1	NUS1 dehydrodolichyl diphosphate synthase subunit	within coordinates
Rr224795	regulatory region 224795	within coordinates
Rr401887	regulatory region 401887	1568 bp downstream
Tssr93302	transcription start site region 93302	1613 bp downstream
Tssr93303	transcription start site region 93303	1582 bp downstream
Tssr93304	transcription start site region 93304	1481 bp downstream
Tssr93305	transcription start site region 93305	1275 bp downstream
Tssr93306	transcription start site region 93306	1151 bp downstream
Tssr97579	transcription start site region 97579	289 bp downstream