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rs247272876 SNP Detail
Summary
  • ID
    rs247272876
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:5848993 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGAAAAAA GGCACTTATC
TATCCCTAAC ATGCAATACT GCAGATCCAA GTTACACTTA TCTGTCAACA GCAGTCTGCT
GTTTCCTGCT CCGAGATGGA ATGAAGCAAC TCTTCTGCTT ATGAAGAGAA ACCTGTCTGA
GGCAAACGAA ACATTGGCAC ACTGCACCGC CTCGCAGCCG CTCGATCCCA CTCATCTCAA
Y
AAGCTCAGCT TCTTTTTACT CCAGGCTTAA TGCAGCATTT TCACTTCATT TCTATTCTGC
TTTTGTAAAA GCAGTTTTGA GATGAACATT TGATCTTCAC TGTTTTTCAT CAATTCTTTA
CTTTTGTGGA TAAAGCTTGG TAGATAAGCC ATAACTTTTA AAGGTATTGC CATAACTTTA
TACTGGTTGC TTTCATTTGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662589 MGP_WTSI_19_5798965 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247272876 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662589 MGP_WTSI_19_5798965 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848993 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 35 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 600 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 453 bp proximal
Tssr5416 transcription start site region 5416 1650 bp upstream
Tssr5417 transcription start site region 5417 61 bp downstream
Tssr5418 transcription start site region 5418 544 bp downstream
Tssr5419 transcription start site region 5419 1198 bp downstream
Tssr5420 transcription start site region 5420 1215 bp downstream
Tssr157652 transcription start site region 157652 1861 bp upstream
Tssr157653 transcription start site region 157653 1777 bp upstream
Tssr157654 transcription start site region 157654 1723 bp upstream
Tssr157655 transcription start site region 157655 1697 bp upstream
Tssr157656 transcription start site region 157656 1664 bp upstream
Tssr157657 transcription start site region 157657 1544 bp upstream
Tssr157658 transcription start site region 157658 1438 bp upstream
Tssr157659 transcription start site region 157659 1334 bp upstream
Tssr157660 transcription start site region 157660 1238 bp upstream
Tssr157661 transcription start site region 157661 1205 bp upstream
Tssr157662 transcription start site region 157662 1112 bp upstream
Tssr157663 transcription start site region 157663 1051 bp upstream
Tssr157664 transcription start site region 157664 937 bp upstream
Tssr157665 transcription start site region 157665 928 bp upstream
Tssr157666 transcription start site region 157666 896 bp upstream
Tssr157667 transcription start site region 157667 642 bp upstream
Tssr157668 transcription start site region 157668 601 bp upstream
Tssr157669 transcription start site region 157669 582 bp upstream
Tssr157670 transcription start site region 157670 566 bp upstream
Tssr157671 transcription start site region 157671 545 bp upstream
Tssr157672 transcription start site region 157672 495 bp upstream
Tssr157673 transcription start site region 157673 461 bp upstream
Tssr157674 transcription start site region 157674 449 bp upstream
Tssr157675 transcription start site region 157675 436 bp upstream
Tssr157676 transcription start site region 157676 421 bp upstream
Tssr157677 transcription start site region 157677 399 bp upstream
Tssr157678 transcription start site region 157678 385 bp upstream
Tssr157679 transcription start site region 157679 317 bp upstream
Tssr157680 transcription start site region 157680 290 bp upstream
Tssr157681 transcription start site region 157681 269 bp upstream
Tssr157682 transcription start site region 157682 256 bp upstream
Tssr157683 transcription start site region 157683 220 bp upstream
Tssr157684 transcription start site region 157684 210 bp upstream
Tssr157685 transcription start site region 157685 195 bp upstream
Tssr157686 transcription start site region 157686 134 bp upstream
Tssr157687 transcription start site region 157687 113 bp upstream
Tssr157688 transcription start site region 157688 66 bp upstream
Tssr157689 transcription start site region 157689 29 bp upstream
Tssr157690 transcription start site region 157690 38 bp downstream
Tssr157691 transcription start site region 157691 84 bp downstream
Tssr157692 transcription start site region 157692 138 bp downstream
Tssr157693 transcription start site region 157693 195 bp downstream
Tssr157694 transcription start site region 157694 253 bp downstream
Tssr157695 transcription start site region 157695 317 bp downstream
Tssr157696 transcription start site region 157696 338 bp downstream
Tssr157697 transcription start site region 157697 387 bp downstream
Tssr157698 transcription start site region 157698 403 bp downstream
Tssr157699 transcription start site region 157699 461 bp downstream
Tssr157700 transcription start site region 157700 510 bp downstream
Tssr157701 transcription start site region 157701 528 bp downstream
Tssr157702 transcription start site region 157702 564 bp downstream
Tssr157703 transcription start site region 157703 615 bp downstream
Tssr157704 transcription start site region 157704 641 bp downstream
Tssr157705 transcription start site region 157705 662 bp downstream
Tssr157706 transcription start site region 157706 710 bp downstream
Tssr157707 transcription start site region 157707 756 bp downstream
Tssr157708 transcription start site region 157708 766 bp downstream
Tssr157709 transcription start site region 157709 778 bp downstream
Tssr157710 transcription start site region 157710 797 bp downstream
Tssr157711 transcription start site region 157711 816 bp downstream
Tssr157712 transcription start site region 157712 853 bp downstream
Tssr157713 transcription start site region 157713 880 bp downstream
Tssr157714 transcription start site region 157714 931 bp downstream
Tssr157715 transcription start site region 157715 948 bp downstream
Tssr157716 transcription start site region 157716 992 bp downstream
Tssr157717 transcription start site region 157717 1019 bp downstream
Tssr157718 transcription start site region 157718 1064 bp downstream
Tssr157719 transcription start site region 157719 1118 bp downstream
Tssr157720 transcription start site region 157720 1137 bp downstream
Tssr157721 transcription start site region 157721 1173 bp downstream
Tssr157722 transcription start site region 157722 1190 bp downstream
Tssr157723 transcription start site region 157723 1265 bp downstream
Tssr157724 transcription start site region 157724 1274 bp downstream
Tssr157725 transcription start site region 157725 1320 bp downstream
Tssr157726 transcription start site region 157726 1325 bp downstream
Tssr157727 transcription start site region 157727 1340 bp downstream
Tssr157728 transcription start site region 157728 1437 bp downstream
Tssr157729 transcription start site region 157729 1636 bp downstream
Tssr157730 transcription start site region 157730 1766 bp downstream
Tssr157731 transcription start site region 157731 1789 bp downstream
Tssr157732 transcription start site region 157732 1832 bp downstream
Tssr157733 transcription start site region 157733 1869 bp downstream
Tssr157734 transcription start site region 157734 1886 bp downstream
Tssr157735 transcription start site region 157735 1910 bp downstream
Tssr157736 transcription start site region 157736 1948 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory