rs247288310 SNP Detail

Summary

• ID
  rs247288310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98887622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGATGCA GCCGCCTTTA
  AACACAGCTG TCTTTTGGTC CAGATAGTGA AGCACGCGAT CTACCGCATT TTTAGACCTC
  TGTCCAAGTG TGAAGGAACT TTTGTTTCTG AGTCATGAAT TCAACTGGAG GCAAGATAGA
  AGAATGAGAA TGTAGATGAG GGAAGGATAT ATTTATTTTT AAAGAAACTA CCTGGGCAAG
  R
  GAAACTTTTC TTGTAGGAGG GAAATATAAG ACAGAAGAAG ACCTGATAGC CTTGGTTAGA
  AGGACATATA ACAGTTCAAC ATGAAGGTAT ACTCCTGTAC AGCAAGGGGA TCAGTAGTTC
  AAAGCCATGC TCAGCTAGGT AGAGAGTTCA AGGCCAGCCT GGTGAGCTAA AGGAGAACCT
  GTCTTTAAAG GGGATCGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324133999	CHEV_12_100159573	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247288310					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98887622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	644 bp distal
Rr403444	regulatory region 403444	845 bp downstream
Rr470976	regulatory region 470976	741 bp distal
Rr470977	regulatory region 470977	932 bp distal
Rr470978	regulatory region 470978	413 bp proximal
Tssr114655	transcription start site region 114655	810 bp downstream
Tssr114656	transcription start site region 114656	744 bp downstream
Tssr114657	transcription start site region 114657	729 bp downstream
Tssr114658	transcription start site region 114658	701 bp downstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates