About   Help   FAQ
rs247299842 SNP Detail
Summary
  • ID
    rs247299842
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:135776812 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGAACCGCC TGGCTGTGAG
TGACCCTAGC CCGGCCACTG AGCCCTCGGT CCCATATCTC TTCACAGACA TTGGTTCAAG
TGGCAGCATT TATCACATCA CATAAATCCA TGTCATTGAC CCAGTGTTGA CATCGTACCA
ATGAACAGGA CAGACAGACA GACCAGGGCC TCATGTCCAT GATTTTAAGA CCCTCTAGCC
Y
CCATCCCTTC CCTAGTGCAG GCTACATGGA GACTGAGGGC CTCTCAGCCT GGGGGCATGG
TGGGATTTTA TAGACATGAA TCAAGGCTTC ATTAACTCAT TCATACAACA ATTCATCTAT
CCATTCAGTA GACTTCAGCA TGCCCATCTT GTGCCAGAAG GTACCTCAAA GAGCTCCTCG
TCCAGTGGGA AGAGAGCTGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351552070 MGP_WTSI_1_137745651 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247299842 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351552070 MGP_WTSI_1_137745651 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:135776812 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr12644 regulatory region 12644 1212 bp distal
Rr12645 regulatory region 12645 1589 bp proximal
Tnnt2 troponin T2, cardiac within coordinates
Tssr225 transcription start site region 225 1334 bp downstream
Tssr226 transcription start site region 226 1064 bp upstream
Tssr227 transcription start site region 227 366 bp downstream
Tssr9015 transcription start site region 9015 1338 bp downstream
Tssr9016 transcription start site region 9016 1086 bp downstream
Tssr9017 transcription start site region 9017 1048 bp downstream
Tssr9018 transcription start site region 9018 1030 bp downstream
Tssr9019 transcription start site region 9019 997 bp downstream
Tssr9020 transcription start site region 9020 226 bp downstream
Tssr9021 transcription start site region 9021 206 bp downstream
Tssr9022 transcription start site region 9022 269 bp upstream
Tssr9023 transcription start site region 9023 288 bp upstream
Tssr9024 transcription start site region 9024 382 bp upstream
Tssr9025 transcription start site region 9025 671 bp upstream
Tssr9026 transcription start site region 9026 873 bp upstream
Tssr9027 transcription start site region 9027 983 bp upstream
Tssr9028 transcription start site region 9028 1023 bp upstream
Tssr9029 transcription start site region 9029 1603 bp upstream
Tssr9030 transcription start site region 9030 1638 bp upstream
Tssr9031 transcription start site region 9031 1697 bp upstream
Tssr13890 transcription start site region 13890 1299 bp upstream
Tssr13891 transcription start site region 13891 1054 bp upstream
Tssr13892 transcription start site region 13892 987 bp upstream
Tssr13893 transcription start site region 13893 970 bp upstream
Tssr13894 transcription start site region 13894 221 bp upstream
Tssr13895 transcription start site region 13895 177 bp upstream
Tssr13896 transcription start site region 13896 304 bp downstream
Tssr13897 transcription start site region 13897 375 bp downstream
Tssr13898 transcription start site region 13898 1663 bp downstream
Tssr13899 transcription start site region 13899 1731 bp downstream
Tssr13900 transcription start site region 13900 1741 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory