rs247303459 SNP Detail

Summary

• ID
  rs247303459
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGTTA AACTCGGGTC
  CTCTGGAAGA GCAGCAAGTG CTCTTAGCCA CTGAGCCATT TCTGTAGGTC CTGGTATGTC
  TCTCTCTCCT CCTTCCTGGG CTCCATCCAT ACTAGCCTTC TCCTTGCTAA GGACTAAGCC
  AAACTCTATC TTGGGACCTT TTATTTTTAT TTTTTATTAT TTTTATATTT TTATATATAT
  W
  TTTTTTTTTG CCCAGAAACC ATTCAGCTTT GGGTATAAAT ACTTCTTCCC TTTTTTCTTC
  TTTTTTTCCT TTTTAAAAAT ATTTGTTTGT TTAATGTATG TAAGTATACT GTTGCTATCT
  TCAGACACAC CAGAAGAGGG CATCCAATCC CATTACAGAT GGTTGTGAGC CACCATGTGG
  TTGCTGGGAA TTGAACTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743404	MGP_WTSI_7_19759804	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	A	A	A	T	A	T	T	T	T	A	T	T	A	A	T	A	T	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247303459					SNP	A	T	A	A	A	A	A	T	A	T	T	T	T	A	T	T	A	A	T	A	T	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743404	MGP_WTSI_7_19759804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1261 bp distal
Cpgi18450	CpG island 18450	1839 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1966 bp upstream
Gm71808	predicted gene, 71808	1644 bp downstream
Rr155270	regulatory region 155270	980 bp distal
Rr155271	regulatory region 155271	21 bp proximal
Rr167137	regulatory region 167137	1179 bp distal
Rr167138	regulatory region 167138	1020 bp proximal
Tssr64790	transcription start site region 64790	1961 bp upstream
Tssr64791	transcription start site region 64791	1991 bp upstream