rs247310212 SNP Detail

Summary

• ID
  rs247310212
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3335975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TACACACACA
  CACCAAACCA AATGGTCAAT TTACTTTTCA ATTATAGCTC TTATTTTACA TCAATTCAGT
  TTTTAATTTT TATTTTATTA TTTTTATTTT ATTATTTTTA TTTTATTATT TATTTATTTA
  TTTTATTTTT ATTTACATCA ATTTATGTTT ATGATTATGT TTAATCAGTT TATGTTCAGG
  T
  TTTTTTTTTT AACAAATATA TGCTTCCCAT AGTTCCCTAA ATTACTATGC ATTTGGTAGT
  CTATATATAC ACTAAATGGT CAATTTACTT TTCAATGATA GCTTTTATTT TACATTGTAA
  ATAAGTTATG TTTGTGAATA AACAGTTTAT AAATGTACCA TTTATGATCA TAGTTAATTT
  TATAAATATC TCAAAATATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss352905795	MGP_WTSI_2_3252210	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs247310212					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352905795	MGP_WTSI_2_3252210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3335975 () rs orientation: forward

Symbol	Name	Function Class
Acbd7	acyl-Coenzyme A binding domain containing 7	Intron
Rr550890	regulatory region 550890	1805 bp distal
Rr550891	regulatory region 550891	740 bp proximal
Rr550892	regulatory region 550892	1241 bp proximal
Tssr15888	transcription start site region 15888	1775 bp downstream
Tssr15889	transcription start site region 15889	1221 bp upstream
Tssr22358	transcription start site region 22358	1044 bp downstream