rs247348936 SNP Detail

Summary

• ID
  rs247348936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:121851093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGCGGG CCGTTCTTCC
  CCTCCCCCCC CCCAACTGGG GAAGGGGTGG GAGTGCCCGG CTCCCTCCAG GCCCGCCTCC
  CTCCTTCCCC GCAAGGTCCC CTGCGCGCGG GTGGTGGCCG ATCCGCATTG CTGTTCCTCG
  TCCGCGGAGC AGAAGGCGCC TTTGAATAGA GGTGGGCGAG GGCCGGACTC TTGAGGTGGG
  Y
  TGGCCGCGGG CTCTGGACAC GCACCGCATT TTCCCTCCCA ACCCCCCCCC CCCCCGGCCC
  AGTTCCTGCA ATTTTTAGGG GTGAGGCGCC GCAACAGAGG AGTTGGTGCG GGTCCGAAGG
  CAACAACTCC CGAGTGTTGG CTTGCGCCCT GGTCCCCCTC TCCCCTTCCC TGGGCCCGAT
  CTCGTTGGTA GGCTGGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366502177	MGP_WTSI_5_122163039	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247348936					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366502177	MGP_WTSI_5_122163039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121851093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700064N11Rik	RIKEN cDNA 1700064N11 gene			11 bp upstream
Atxn2	ataxin 2			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Cpgi16531	CpG island 16531			within coordinates
Rr619651	regulatory region 619651			1576 bp distal
Rr619652	regulatory region 619652			1411 bp distal
Rr619653	regulatory region 619653			402 bp distal
Rr619654	regulatory region 619654			within coordinates
Rr619655	regulatory region 619655			437 bp proximal
Rr619656	regulatory region 619656			1333 bp proximal
Tssr48591	transcription start site region 48591			1171 bp downstream
Tssr48592	transcription start site region 48592			1115 bp downstream
Tssr48593	transcription start site region 48593			980 bp downstream
Tssr48594	transcription start site region 48594			959 bp downstream
Tssr48595	transcription start site region 48595			555 bp downstream
Tssr48596	transcription start site region 48596			1145 bp upstream
Tssr53053	transcription start site region 53053			1551 bp upstream