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rs247352133 SNP Detail
Summary
  • ID
    rs247352133
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:87265299 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      CTGGAGATG TTTTGGTATG TGCCATGTAC
    ATAGGTATAG ATTCATTTTT ACAtgtgttt atgtgcatgt gaaggtcaga ggttgagatt
    agatagcttc cagaattgtt tgagacaggt ttgagacagg atcttagtaa acctaaaact
    Y
    accatttgtc cagattggct agattacaag tgtctccttg tacctgactt tatgtggatg
    ctgaagatcc agagtcaggt cttaatgctg catagcaaat gtgttactga catagccatc
    tcccctggcc AGAGTCTCTT TCAGTTAGCA                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss319829309 CHEV_1_89234152 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs247352133 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:87265299 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gigyf2 GRB10 interacting GYF protein 2 within coordinates
Rr17986 regulatory region 17986 502 bp proximal
Rr27962 regulatory region 27962 195 bp distal
Tssr7841 transcription start site region 7841 964 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory