rs247357554 SNP Detail

Summary

• ID
  rs247357554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATAA AGCTGTGGCT
  ATCCTTTTAG AGTCCTGAAA TATTATGCGT TAACTATCCA ATCAAAACAA GGTTTTTTCA
  TATACAAGCT ACCATTGGTT TAGGTAAAAC TCTATGTGTA GCCAACGAGA TCACTCCGTT
  TTCGCGCCAG AAGTTGAGTA TTAGAATGGT GCTGTGGCTG CATCATTATA CGCTGAACAG
  R
  TCCTGACAGC AAGGTACCTA CAATGTCTGG ACGCGGCAAA CAGGGTGGCA AGGCTCGCGC
  CAAGGCCAAG ACCCGCTCCT CCCGGGCCGG CCTGCAGTTC CCCGTGGGCC GCGTGCACCG
  GCTGCTCCGC AAGGGCAACT ACTCGGAGCG CGTGGGCGCC GGCGCCCCGG TGTACCTGGC
  GGCCGTGCTG GAGTACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289722	CHEV_13_23625757	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247357554					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	1269 bp proximal
Gm55640	predicted gene, 55640	226 bp downstream
Gm60769	predicted gene, 60769	185 bp upstream
H2ac10	H2A clustered histone 10	18 bp upstream
H3c8	H3 clustered histone 8	1530 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	within coordinates
Rr403648	regulatory region 403648	1248 bp upstream
Tssr4007	transcription start site region 4007	183 bp upstream
Tssr118828	transcription start site region 118828	6 bp downstream
Tssr118829	transcription start site region 118829	1523 bp upstream
Tssr121712	transcription start site region 121712	227 bp upstream
Tssr121713	transcription start site region 121713	1277 bp downstream