rs247366578 SNP Detail

Summary

• ID
  rs247366578
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79596130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGTCTCCT GTGTCCTGCC GGGATTACTG
  AGGTTGGCTT ACCACCAACT AGCTTCTCTC TTCAAAACTA TACTAAAGGG TAGCAATTTT
  TCGTTGTTTT CTTGTTTGTT TGTTTGGATG GATGtttttg ttttggagac agtgtctaac
  T
  acatggcaat gtagctttaa ccatcctggt gctccctatg tagaccgggc tgcctttgaa
  ctgtccatcc acttctgact cccaagcgca agagtaaaac cttgagtttt atgccagatt
  ctgtAATTTT CAGTTGTAAC ACTTAACATA                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760572	CHEV_11_79518806	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247366578					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79596130 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	854 bp upstream
Cpgi3370	CpG island 3370	210 bp distal
Gm11205	predicted gene 11205	290 bp downstream
Gm74173	predicted gene, 74173	752 bp upstream
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	583 bp downstream
Rr402778	regulatory region 402778	584 bp downstream
Rr452325	regulatory region 452325	871 bp distal
Rr452326	regulatory region 452326	1630 bp distal
Rr452327	regulatory region 452327	673 bp distal
Rr452328	regulatory region 452328	within coordinates
Rr452329	regulatory region 452329	773 bp proximal
Rr452330	regulatory region 452330	1960 bp proximal
Tssr109524	transcription start site region 109524	787 bp upstream