rs247391149 SNP Detail

Summary

• ID
  rs247391149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7012868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGCTCC TGGGGTGCAT
  GGGCGATGTG TGTGTGTGTG TGCCGCAGGC TCCTGGGGTG CATGGGCGAT GTGTGTGTGC
  CGCAGGCTCC TGGGGTGCAT GGGCGATGTG TGTGCGTGTG CCGCAGGCTC CTGGGGTGCA
  TGGGCGATGT GTGTGTGCCG CAGGCTCCTG GGGTGCATGG GCGATGTGTG TGTGTGTGCC
  R
  GAGATGGGGT GTATCAGTGT CTTCCTCTGT TGCTTTCTAC CTTATTTTTT TGAGGCAGGG
  TGTCTCCTCG AGCCTGGAGC TCAGAAATCC AGCTGGACTG GCTGGCTAAT GAGCCCCACA
  GATGAGCCTC ATACCCCTTT CACTTTCCCT CAGCACTGGG GTCACACATG CCCCCCAACT
  GCACCTGTTT CCGGAACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397551741	MGP_WTSI_17_6949818	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247391149					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397551741	MGP_WTSI_17_6949818	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7012868 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	333 bp proximal
Rr342727	regulatory region 342727	within coordinates
Rr370167	regulatory region 370167	29 bp upstream
Tssr142477	transcription start site region 142477	817 bp upstream
Tssr142478	transcription start site region 142478	840 bp upstream
Tssr146320	transcription start site region 146320	1649 bp upstream
Tssr146321	transcription start site region 146321	1623 bp upstream
Tssr146322	transcription start site region 146322	522 bp downstream
Tssr146323	transcription start site region 146323	1344 bp downstream
Tssr146324	transcription start site region 146324	1390 bp downstream
Tssr146325	transcription start site region 146325	1418 bp downstream