rs247394927 SNP Detail

Summary

• ID
  rs247394927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATCATCT GCCCTTCTAG TCTGGTACAG
  TTCTCTCTCT TCAGGAGGTC CCAGTACTCT CACTTATGGG CTTCTTGGGG TTTGAGTGAA
  GAGTGGGGCC GCAAGTCTCT GCCCTCACTT GTCTAGCTGC TCTGAGGTGC CAGTGGTCAG
  R
  ACTGCATGGG GAAATGAAGT AGGTGCCATG GGCTGTCTCA GCAGAGGCCA GAATGTACAG
  GATGTTCATG TGCCATGGGC AGAGTTCATT TTCCAGCGCA CTATACCACC CAGGTTTCCC
  AGGAGCCTGT GGGAGGCTTG CATGCTGCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234342	CHEV_9_123702187	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247394927					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622134 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	Intron
Tssr92157	transcription start site region 92157	1003 bp upstream
Tssr92158	transcription start site region 92158	997 bp upstream
Tssr92159	transcription start site region 92159	973 bp upstream
Tssr92160	transcription start site region 92160	598 bp upstream
Tssr92161	transcription start site region 92161	577 bp upstream
Tssr92162	transcription start site region 92162	1756 bp downstream