rs247404558 SNP Detail

Summary

• ID
  rs247404558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23703923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAAATGT ATGTAAATAT
  ACTTCAAGTA TTTTGTTATG GACAATATTG CGTCGTACTC GGCCCCATGG TGTAATGGTT
  AGCACTCTGG ACTTTGAATC CAGCGATCCG AGTTCAAATC TCGGTGGGAC CTTCTTTCCT
  TTTGCCGTTC TACCAGTTAC TGGATCATCT TGCTTACATT TCTTCCAGTG GCTGGATCCT
  Y
  CTTCTCAATT CTGGTCTCTG CTAAGTAAGT ATACGGGTGG TTAGAGAGTT AGCTGTTAGA
  GTGTCCATAT TTTTCCGCAG CAATCTTTTC TCTGGAATCT CTTCAAAATA TATTTTCGAA
  TGCAAAAAGA AATGTTAGCA ATAAGCTAAC ATTAGTTATT AGGAGATATT CAGTGACTGT
  TTAAGAGTAA TATGGTATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984163	MGP_WTSI_13_23611622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247404558					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984163	MGP_WTSI_13_23611622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23703923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1464 bp distal
Gm54514	predicted gene, 54514	1503 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TMcat6	nuclear encoded tRNA methionine 6 (anticodon CAT)	1990 bp downstream
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	632 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	69 bp downstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1526 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1677 bp proximal
Rr403642	regulatory region 403642	1922 bp downstream
Rr403643	regulatory region 403643	1390 bp downstream
Rr403644	regulatory region 403644	526 bp downstream
Rr403645	regulatory region 403645	within coordinates