rs247409568 SNP Detail

Summary

• ID
  rs247409568
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGTCTA CACAGGGAAT
  TCTTTTAAGC GACTGAAGCA TATAGCCTCG AAGTATTGTA CCATCTCTCA GCTTGTATTC
  ATTTAGAACT GTCAGTCAAG CCCAGGACTG ATGTTACATA TACACTGTCC TGCACACATG
  GTGAAAACCT GTGTTTCTAA CTGTTGGAAA CCACTCTAGC AGGACAACTT AAAACCAAAA
  K
  CAGAAGCAAG ACAAACAAAC AAACAAACAA CAACAACAAC AAAAAACCAA AACAAGAAAA
  AGAAAAAAAA AGTGATGACT TGTCAACACA CACCTTGAGG TCAAATTTAC CAAGAATTTA
  CTGTAATTGG CTTCTATTAA ATGAACTTTT TAAAAAAGGA TGTCTGCATA GCTAAATTTA
  AATGGAATTC ACCACTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577285	MGP_WTSI_14_75577680	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247409568					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577285	MGP_WTSI_14_75577680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415313 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	137 bp upstream
Rr404213	regulatory region 404213	891 bp downstream
Rr404214	regulatory region 404214	1818 bp upstream
Tssr4479	transcription start site region 4479	1860 bp downstream
Tssr126623	transcription start site region 126623	1268 bp downstream
Tssr126624	transcription start site region 126624	1230 bp downstream
Tssr126625	transcription start site region 126625	1076 bp downstream
Tssr126626	transcription start site region 126626	1051 bp downstream
Tssr126627	transcription start site region 126627	969 bp downstream
Tssr126628	transcription start site region 126628	719 bp downstream
Tssr126629	transcription start site region 126629	28 bp downstream
Tssr126630	transcription start site region 126630	7 bp downstream
Tssr126631	transcription start site region 126631	1705 bp upstream
Tssr126632	transcription start site region 126632	1930 bp upstream
Tssr129769	transcription start site region 129769	1270 bp upstream
Tssr129770	transcription start site region 129770	1191 bp upstream
Tssr129771	transcription start site region 129771	528 bp downstream
Tssr129772	transcription start site region 129772	1384 bp downstream