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rs247418499 SNP Detail
Summary
  • ID
    rs247418499
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127455 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTCCA CTATCTCCAT CCCCTCCTCC
W
CCACCCCATT CTCACCATCT CTTCC                                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198924 CHEV_7_51733401 CHEVERUD SCREENING_POP f SNP A T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs247418499 SNP A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127455 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1677 bp downstream
Tssr2223 transcription start site region 2223 1498 bp downstream
Tssr2224 transcription start site region 2224 652 bp downstream
Tssr2225 transcription start site region 2225 612 bp downstream
Tssr2226 transcription start site region 2226 86 bp downstream
Tssr2227 transcription start site region 2227 980 bp upstream
Tssr66203 transcription start site region 66203 1980 bp downstream
Tssr66204 transcription start site region 66204 1924 bp downstream
Tssr66205 transcription start site region 66205 1900 bp downstream
Tssr66206 transcription start site region 66206 1887 bp downstream
Tssr66207 transcription start site region 66207 1867 bp downstream
Tssr66208 transcription start site region 66208 1853 bp downstream
Tssr66209 transcription start site region 66209 1822 bp downstream
Tssr66210 transcription start site region 66210 1789 bp downstream
Tssr66211 transcription start site region 66211 1749 bp downstream
Tssr66212 transcription start site region 66212 1706 bp downstream
Tssr66213 transcription start site region 66213 1691 bp downstream
Tssr66214 transcription start site region 66214 1659 bp downstream
Tssr66215 transcription start site region 66215 1629 bp downstream
Tssr66216 transcription start site region 66216 1582 bp downstream
Tssr66217 transcription start site region 66217 1510 bp downstream
Tssr66218 transcription start site region 66218 1456 bp downstream
Tssr66219 transcription start site region 66219 1414 bp downstream
Tssr66220 transcription start site region 66220 1380 bp downstream
Tssr66221 transcription start site region 66221 1361 bp downstream
Tssr66222 transcription start site region 66222 1308 bp downstream
Tssr66223 transcription start site region 66223 1241 bp downstream
Tssr66224 transcription start site region 66224 1218 bp downstream
Tssr66225 transcription start site region 66225 1198 bp downstream
Tssr66226 transcription start site region 66226 1185 bp downstream
Tssr66227 transcription start site region 66227 1144 bp downstream
Tssr66228 transcription start site region 66228 1141 bp downstream
Tssr66229 transcription start site region 66229 1128 bp downstream
Tssr66230 transcription start site region 66230 1108 bp downstream
Tssr66231 transcription start site region 66231 1073 bp downstream
Tssr66232 transcription start site region 66232 1061 bp downstream
Tssr66233 transcription start site region 66233 1039 bp downstream
Tssr66234 transcription start site region 66234 1009 bp downstream
Tssr66235 transcription start site region 66235 989 bp downstream
Tssr66236 transcription start site region 66236 962 bp downstream
Tssr66237 transcription start site region 66237 941 bp downstream
Tssr66238 transcription start site region 66238 922 bp downstream
Tssr66239 transcription start site region 66239 871 bp downstream
Tssr66240 transcription start site region 66240 790 bp downstream
Tssr66241 transcription start site region 66241 778 bp downstream
Tssr66242 transcription start site region 66242 698 bp downstream
Tssr66243 transcription start site region 66243 684 bp downstream
Tssr66244 transcription start site region 66244 633 bp downstream
Tssr66245 transcription start site region 66245 571 bp downstream
Tssr66246 transcription start site region 66246 543 bp downstream
Tssr66247 transcription start site region 66247 496 bp downstream
Tssr66248 transcription start site region 66248 455 bp downstream
Tssr66249 transcription start site region 66249 432 bp downstream
Tssr66250 transcription start site region 66250 413 bp downstream
Tssr66251 transcription start site region 66251 388 bp downstream
Tssr66252 transcription start site region 66252 357 bp downstream
Tssr66253 transcription start site region 66253 329 bp downstream
Tssr66254 transcription start site region 66254 281 bp downstream
Tssr66255 transcription start site region 66255 254 bp downstream
Tssr66256 transcription start site region 66256 205 bp downstream
Tssr66257 transcription start site region 66257 194 bp downstream
Tssr66258 transcription start site region 66258 151 bp downstream
Tssr66259 transcription start site region 66259 115 bp downstream
Tssr66260 transcription start site region 66260 8 bp downstream
Tssr66261 transcription start site region 66261 within coordinates
Tssr66262 transcription start site region 66262 17 bp upstream
Tssr66263 transcription start site region 66263 23 bp upstream
Tssr66264 transcription start site region 66264 33 bp upstream
Tssr66265 transcription start site region 66265 62 bp upstream
Tssr66266 transcription start site region 66266 105 bp upstream
Tssr66267 transcription start site region 66267 133 bp upstream
Tssr66268 transcription start site region 66268 162 bp upstream
Tssr66269 transcription start site region 66269 182 bp upstream
Tssr66270 transcription start site region 66270 233 bp upstream
Tssr66271 transcription start site region 66271 251 bp upstream
Tssr66272 transcription start site region 66272 317 bp upstream
Tssr66273 transcription start site region 66273 329 bp upstream
Tssr66274 transcription start site region 66274 344 bp upstream
Tssr66275 transcription start site region 66275 352 bp upstream
Tssr66276 transcription start site region 66276 381 bp upstream
Tssr66277 transcription start site region 66277 389 bp upstream
Tssr66278 transcription start site region 66278 421 bp upstream
Tssr66279 transcription start site region 66279 468 bp upstream
Tssr66280 transcription start site region 66280 507 bp upstream
Tssr66281 transcription start site region 66281 538 bp upstream
Tssr66282 transcription start site region 66282 564 bp upstream
Tssr66283 transcription start site region 66283 578 bp upstream
Tssr66284 transcription start site region 66284 595 bp upstream
Tssr66285 transcription start site region 66285 610 bp upstream
Tssr66286 transcription start site region 66286 647 bp upstream
Tssr66287 transcription start site region 66287 665 bp upstream
Tssr66288 transcription start site region 66288 701 bp upstream
Tssr66289 transcription start site region 66289 749 bp upstream
Tssr66290 transcription start site region 66290 810 bp upstream
Tssr66291 transcription start site region 66291 839 bp upstream
Tssr66292 transcription start site region 66292 877 bp upstream
Tssr66293 transcription start site region 66293 895 bp upstream
Tssr66294 transcription start site region 66294 916 bp upstream
Tssr66295 transcription start site region 66295 1201 bp upstream
Tssr66296 transcription start site region 66296 1334 bp upstream
Tssr66297 transcription start site region 66297 1377 bp upstream
Tssr66298 transcription start site region 66298 1402 bp upstream
Tssr66299 transcription start site region 66299 1471 bp upstream
Tssr66300 transcription start site region 66300 1478 bp upstream
Tssr66301 transcription start site region 66301 1502 bp upstream
Tssr66302 transcription start site region 66302 1516 bp upstream
Tssr66303 transcription start site region 66303 1557 bp upstream
Tssr66304 transcription start site region 66304 1565 bp upstream
Tssr66305 transcription start site region 66305 1575 bp upstream
Tssr66306 transcription start site region 66306 1609 bp upstream
Tssr66307 transcription start site region 66307 1666 bp upstream
Tssr66308 transcription start site region 66308 1719 bp upstream
Tssr66309 transcription start site region 66309 1740 bp upstream
Tssr66310 transcription start site region 66310 1778 bp upstream
Tssr66311 transcription start site region 66311 1855 bp upstream
Tssr66312 transcription start site region 66312 1871 bp upstream
Tssr66313 transcription start site region 66313 1892 bp upstream
Tssr66314 transcription start site region 66314 1900 bp upstream
Tssr66315 transcription start site region 66315 1920 bp upstream
Tssr66316 transcription start site region 66316 1979 bp upstream
Tssr66317 transcription start site region 66317 1991 bp upstream
Tssr72199 transcription start site region 72199 548 bp upstream
Tssr72200 transcription start site region 72200 398 bp downstream
Tssr72201 transcription start site region 72201 899 bp downstream
Tssr72202 transcription start site region 72202 1762 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory