rs247420129 SNP Detail

Summary

• ID
  rs247420129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8107007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAACTCGG ATATGTGGCG TGAGATAGTG
  CAAGTTGGTG TTGACTTCCT GCTCTCTCGG AATGTCCCCA AAGCAACAAC AGCCATCTTG
  ATCTAGAATG GTTCTGTGGT CACTCCCTTG AAAAGAAAGT GACAGGGAGA CCAGAAAGTC
  Y
  GGAGAAATGA GCTGAAGTCC TAGAGGAAGA CCACTTAGGC AGATGTGGGA GGTGTACTGT
  CAGAGACAGA GGGACCCTCA TTTTAGATAT AACCGGGCCG GCCATCCCTG TTCTTCCCAA
  GCCACACCTG TCAGCCCTGT ACTAACTCCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321459856	CHEV_5_8057007	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247420129					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8107007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	99 bp distal
Gm15730	predicted gene 15730	1454 bp downstream
Sri	sorcin	within coordinates
Tssr45106	transcription start site region 45106	1893 bp downstream
Tssr45107	transcription start site region 45107	456 bp downstream
Tssr45108	transcription start site region 45108	422 bp downstream