rs247422839 SNP Detail

Summary

• ID
  rs247422839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGCTAC ATGAGACCCT
  AGAGGACACT AGGGTAAGCC CCTATCAGAA TTAAGTGATA AATACATAGT AAATGGCAGC
  TCTTCTGTTA GTCCCTATGT CGCCATGTTG TTCCCTCAGC TGGGAGCTCA CCTGGTTCCC
  TTAGCTCGTT TACTCTTGCT CATCCTTAAA CAACATCGAC AAATACCTGC CGGTCCCTAA
  W
  TACTCTCCAC TCACTAGGTT GTGTGTCCTC GAAGCAGGCC TGTGGGATAG GTCTGTTATT
  GTCCCCATTC TATGTATAAG TAAACTGAGG TTAAACAACC AGTCTGCTTT ACCTGTTCAA
  AGAATCTCCG ATAACTTAAT ATGATAATCA GTCAAATAAG ATCTCAGCAG ACAAGACCGT
  AATTGCACTA ACGCCACCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss370901042	MGP_WTSI_7_30980994	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	T	A	T	T	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	T	A	T	T	A	A	T	A	T	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247422839					SNP	A	A	A	T	T	A	T	T	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	T	A	T	T	A	A	T	A	T	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370901042	MGP_WTSI_7_30980994	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895400 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1934 bp distal
Cpgi18783	CpG island 18783	659 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	662 bp upstream
Rr400233	regulatory region 400233	639 bp downstream
Tssr71703	transcription start site region 71703	1942 bp upstream
Tssr71704	transcription start site region 71704	1835 bp upstream
Tssr71705	transcription start site region 71705	1813 bp upstream
Tssr71706	transcription start site region 71706	944 bp upstream
Tssr71707	transcription start site region 71707	932 bp upstream
Tssr71708	transcription start site region 71708	885 bp upstream
Tssr71709	transcription start site region 71709	750 bp upstream
Tssr71710	transcription start site region 71710	406 bp upstream