rs247438178 SNP Detail

Summary

• ID
  rs247438178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101268938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCTTAT TATTCTATTT
  TATTTTGTTT TAATTATTTT TCTTTTTGTT TTATGTGTAT GGGTGTTTTG TCTGCATATA
  TGTCTATGCA CCATGTGCGT GCTTGGTGCT TGCAGATTCC AGATCTCCTG GGGCTGGAGT
  TAACAGCTGT TGTGAACTGC CATGTGGGTG CTGGAAATTG AACCCAGGTC CTCAAAATGC
  R
  TGTAAAAATA CCAAGTCTGG TAGTGCACAT CTTTTTTTTT TGTTTTTTTT TTTTTTGTTT
  TTCGAGACAG GGTTTCTCTG TTCCCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG
  GCCTCGAACT CAGAAATCCG CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGTGTGCG
  CCACCAACGC CCGGCCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323832926	CHEV_11_101239426	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247438178					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101268938 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	209 bp downstream
Rr456962	regulatory region 456962	537 bp proximal
Tssr3676	transcription start site region 3676	1781 bp downstream
Tssr105099	transcription start site region 105099	1624 bp downstream
Tssr105100	transcription start site region 105100	1482 bp downstream
Tssr105101	transcription start site region 105101	1469 bp downstream
Tssr105102	transcription start site region 105102	1442 bp downstream
Tssr105103	transcription start site region 105103	931 bp downstream
Tssr105104	transcription start site region 105104	920 bp downstream
Tssr105105	transcription start site region 105105	901 bp downstream
Tssr105106	transcription start site region 105106	881 bp downstream
Tssr105107	transcription start site region 105107	798 bp downstream