rs247449398 SNP Detail

Summary

• ID
  rs247449398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75101941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGGGAACTC CCACCCTCCT CAAGGCGGGC
  CTGTCCTGGT GCGCAAACTG AGAGGCCACC CCCCCACACA CAACACACTC AGGAAGGCGG
  GGTCTTGGGT GTGGGCGGAG CCAGGGCCCT GGTGGGCGGG GCCCGAACCT CACTTGTTAA
  M
  GCCACTCGCA ACTCTGCTGC TTTCCTAATT CCTTTCCTGT TGCCCTAAGT TGAAACGAAA
  TACTACTTCT CTCTTGCCTC TTCATCTTTT TTTTATCTGC TTTACATTTT AGTTACTTAT
  TTAAATCTTA AATGCAGGGA gagggcaggg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795815	CHEV_1_75121871	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247449398					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75101941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi409	CpG island 409	within coordinates
Nhej1	non-homologous end joining factor 1	71 bp upstream
Rr17463	regulatory region 17463	1941 bp distal
Rr29642	regulatory region 29642	within coordinates
Rr371532	regulatory region 371532	within coordinates
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	244 bp downstream
Tssr12335	transcription start site region 12335	347 bp upstream
Tssr12336	transcription start site region 12336	87 bp upstream
Tssr12337	transcription start site region 12337	42 bp upstream