rs247452766 SNP Detail

Summary

• ID
  rs247452766
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166081924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTGCCGC GCAGCCTGTG
  CGTGCGGGAA CGGCCCCCGC AGCCCAATCG GACTCTAGAG CCAGCGGCAG CGCGCCTCTC
  GCAGGCGGCG GCGTCCAGCG CCCGGGGCCG GGCTGCGCGG CCAGCCCCGA GGGCTGCGGC
  GCCAGGGACG CGCGGGGCCC GCGCTCCGCC GCCGCCGCCG CCTGCTGCTG CGAGGTCATC
  S
  GGATCTTATC GTGCCAGCTG ATGCCCGCTT TTCCCACTCT GGATCTGGAT GGGAAGTTGG
  GGAAGATGGA TAGGGTCGTG TTGGGGTGGA CCGCTGTCTT CTGGTTAACA GGTAAGAGTC
  GTTTGCCACA GCTACGGATA ACTTTAAATG TATTCCTACA GTGGTGGTGT TCCACTCCAC
  CTTCGTTTTC CTCCTTTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352259871	MGP_WTSI_1_168184486	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247452766					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352259871	MGP_WTSI_1_168184486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166081924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	within coordinates
Ildr2	immunoglobulin-like domain containing receptor 2	within coordinates
Rr422555	regulatory region 422555	152 bp distal
Rr422556	regulatory region 422556	222 bp distal
Rr422557	regulatory region 422557	within coordinates
Rr422558	regulatory region 422558	1239 bp proximal
Tssr9868	transcription start site region 9868	265 bp downstream
Tssr9869	transcription start site region 9869	199 bp downstream
Tssr9870	transcription start site region 9870	185 bp downstream
Tssr9871	transcription start site region 9871	106 bp downstream