rs247458588 SNP Detail

Summary

• ID
  rs247458588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164723096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAATTT TCAATAAAGG
  TGGACAAGAT GTGTTATACG TGTTTGCATG TTTTTATTTT TATTTATTTC AAGACAGCCA
  AAGAAGTGTG TCTTTTCTTA GTTGTGGGTG GCTTGAGATA GTGCCCCAAC TTTCCTTACG
  TTCGCTTTGC ACCCTTTGCT TTGGTTTACA GACACTTTGA TTGGCAATGT ATCAGGGCTC
  Y
  GTTGTGCAAA ATGAAAACAT GATTACCATT GGCATATGTC TATATTCCAC CTAACGGGAA
  GGCTGAAACG GAAGGATCTC TTGAGCCCAG TGGTTGAAGA AAGGCAGGGC TAGTTCAGAA
  AGAGAGCTGA TCATGGTGGC TTTCACCTGT AACCCTAACA CTTGGGAGGT CGGTCGAAGA
  AGAGGACAGG TTGGGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356442904	MGP_WTSI_2_164706676	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247458588					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356442904	MGP_WTSI_2_164706676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164723096 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	863 bp distal
Gm75548	predicted gene, 75548	1377 bp upstream
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	1665 bp downstream
Rr397481	regulatory region 397481	1072 bp downstream
Rr569751	regulatory region 569751	1809 bp distal
Rr569752	regulatory region 569752	1388 bp distal
Rr569753	regulatory region 569753	1773 bp distal
Rr569754	regulatory region 569754	887 bp distal
Rr569755	regulatory region 569755	1286 bp proximal
Tssr21683	transcription start site region 21683	1778 bp downstream
Tssr21684	transcription start site region 21684	1137 bp downstream
Tssr21685	transcription start site region 21685	1115 bp downstream
Tssr27592	transcription start site region 27592	1372 bp upstream