rs247462120 SNP Detail

Summary

• ID
  rs247462120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26088558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGGTAGT AGCAGAAAGT
  GGTCTTGAAC CCTTGAACCA CCTGCCTGCC TCCCCAGTGC TTAGTTACAA GTGTGTACCA
  CTGCAGCCAT CTTTGACTCT ATATTTTAGT TTGCTTGCTT ATTTATTTAT TTAGAGACAG
  GGTTTCACGA TGTAGGCCTG GCTGGCCCAG AACTCGTTAT GTAGACCAGG CTTGCCTTGA
  R
  CTCACAGAGA TTCATTTGCC TGGTCCTCTA AATTGCTCAG ATTTAAATGT GTGCACCACC
  ATGCCTGGCT CGAGCTTTCT TCAACTTTTC TGAGAACTCT GATGATAAAA TTATGAGCTG
  TACAAAATAG AATAAGTTTT GAGGGCTGGG CATGGTAGTG CATGCCTTTT ATGCCAGTAC
  TTAATAGACA AGACTGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374007175	MGP_WTSI_8_26709014	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247462120					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374007175	MGP_WTSI_8_26709014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26088558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	728 bp distal
D830025C05Rik	RIKEN cDNA D830025C05 gene	within coordinates
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	960 bp upstream
Rr368506	regulatory region 368506	807 bp downstream
Rr400804	regulatory region 400804	1293 bp downstream
Tssr76686	transcription start site region 76686	1415 bp downstream
Tssr76687	transcription start site region 76687	837 bp downstream
Tssr80717	transcription start site region 80717	1504 bp upstream
Tssr80718	transcription start site region 80718	1025 bp upstream
Tssr80719	transcription start site region 80719	944 bp upstream
Tssr80720	transcription start site region 80720	928 bp upstream