rs247462588 SNP Detail

Summary

• ID
  rs247462588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtagacca ggctggcctc gaactcagaa
  atctgcctgc ctctgcctcc caagtgctgg gattaaaggc atgtgccatc actgcccggc
  tGTATGCAAA TTCTAATGGT GTCTTTTTTG AGGAATATGT CATTGAGAAT ATGAATAGTT
  Y
  ATTACTTTAT TTTTGTGGCT AAAGTTGTTT TTCTGTAACC TAATGTACAA AACACTACAT
  TTTTCGAGTT TCAATTGGAT GATTCCCCAC CTGTCCAATT TCTAAATAGG AAATTTATGT
  taagataaat taaaattttc ccggcccaag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321935853	CHEV_6_123231814	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247462588					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258755 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	934 bp upstream
Tssr58809	transcription start site region 58809	1596 bp upstream
Tssr58810	transcription start site region 58810	1622 bp upstream
Tssr58811	transcription start site region 58811	1658 bp upstream
Tssr63019	transcription start site region 63019	224 bp upstream
Tssr63020	transcription start site region 63020	697 bp downstream
Tssr63021	transcription start site region 63021	783 bp downstream
Tssr63022	transcription start site region 63022	818 bp downstream
Tssr63023	transcription start site region 63023	846 bp downstream
Tssr63024	transcription start site region 63024	949 bp downstream
Tssr63025	transcription start site region 63025	1002 bp downstream
Tssr63026	transcription start site region 63026	1013 bp downstream
Tssr63027	transcription start site region 63027	1062 bp downstream
Tssr63028	transcription start site region 63028	1075 bp downstream
Tssr63029	transcription start site region 63029	1106 bp downstream
Tssr63030	transcription start site region 63030	1136 bp downstream
Tssr63031	transcription start site region 63031	1193 bp downstream
Tssr63032	transcription start site region 63032	1217 bp downstream
Tssr63033	transcription start site region 63033	1242 bp downstream
Tssr63034	transcription start site region 63034	1261 bp downstream
Tssr63035	transcription start site region 63035	1282 bp downstream
Tssr63036	transcription start site region 63036	1336 bp downstream
Tssr63037	transcription start site region 63037	1366 bp downstream
Tssr63038	transcription start site region 63038	1403 bp downstream
Tssr63039	transcription start site region 63039	1462 bp downstream
Tssr63040	transcription start site region 63040	1520 bp downstream
Tssr63041	transcription start site region 63041	1569 bp downstream
Tssr63042	transcription start site region 63042	1594 bp downstream
Tssr63043	transcription start site region 63043	1604 bp downstream
Tssr63044	transcription start site region 63044	1626 bp downstream
Tssr63045	transcription start site region 63045	1717 bp downstream
Tssr63046	transcription start site region 63046	1736 bp downstream
Tssr63047	transcription start site region 63047	1759 bp downstream
Tssr63048	transcription start site region 63048	1787 bp downstream
Tssr63049	transcription start site region 63049	1802 bp downstream
Tssr63050	transcription start site region 63050	1826 bp downstream
Tssr63051	transcription start site region 63051	1878 bp downstream