rs247466645 SNP Detail

Summary

• ID
  rs247466645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137546663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGACTCCA GGGCTGAAGA
  GGCAGAGACA CAGGAATCTC TAGAGCAGAC TAGCTAGCCA GCCTAGAAGA ATCCATGCAT
  CCCAGAGACA GTGAGATACG CTACCCCCAA AGATAAGGCT GAGAAGACAC TTGATAGGAA
  CCTCTGGTTT CCATTTGCAT CCATACACAC ATAGGCTCAC TATGTGTATA TAAGACACAC
  R
  CACTCACATA AACACATAAA CATACACACA CACACACACA CACACACACA CACACATCGT
  GACTTAAATT GAAGAAGGTA CAACCCCAGT CCAGAAGAGT AAGTCAGGCA GATACTGACT
  TTTGCTGTCT GTTTGGACGA TTGGGCCTCC TGTTTGTTCT TACACAGTAC TACATAGTAT
  CCTAGCTTTG TATTTTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370242446	MGP_WTSI_6_137518186	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247466645					SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370242446	MGP_WTSI_6_137518186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137546663 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640222	regulatory region 640222	1431 bp distal
Rr640223	regulatory region 640223	within coordinates
Rr640224	regulatory region 640224	558 bp proximal
Rr640225	regulatory region 640225	1342 bp proximal
Rr640226	regulatory region 640226	1660 bp proximal
Tssr63894	transcription start site region 63894	1081 bp downstream
Tssr63895	transcription start site region 63895	1120 bp downstream
Tssr63896	transcription start site region 63896	1147 bp downstream
Tssr63897	transcription start site region 63897	1342 bp downstream
Tssr63898	transcription start site region 63898	1373 bp downstream