rs247472209 SNP Detail

Summary

• ID
  rs247472209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11337304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACACTA CAGATGACAG
  TGCAAATACT GTTGCTGACA GAGAGTTTGG GGTCATGGTC TGCTCAGTTC TCTTACAATT
  CCCCAGGAAG AGCCACAGAT AGTAGGTTCT AGAAAGGAGA GAGCTGATGA GCAATGCTTT
  CAGCACCTAA GAAGATGTTC GCCAACCAGG AGATAGTTGT TGCTGAGTTT CTTAAATGCT
  S
  CCGTGCAGAA GACCCATAAA CTTACCAACT GAAGTGAGCT TCACTCTTGT CATTTACCAA
  GTGAGGAGTG GCATTGTCCA TGGGTATCTG AGACATGGTC AGTCTCCTGA TATGGTACTC
  ACCCTCCCAT GTTGTAATGC AAGCTGTCTA CTCTCCTATG TCACTTCCTC TTCCTGACAC
  TTGCAAGAGA AGGGGTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353092504	MGP_WTSI_2_11254120	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247472209					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353092504	MGP_WTSI_2_11254120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11337304 () rs orientation: forward

Symbol	Name	Function Class
Gm37851	predicted gene, 37851	332 bp upstream
Gm38171	predicted gene, 38171	within coordinates
Gm75637	predicted gene, 75637	266 bp upstream
Rr396766	regulatory region 396766	715 bp downstream
Rr551766	regulatory region 551766	within coordinates
Rr551767	regulatory region 551767	798 bp distal
Rr551768	regulatory region 551768	135 bp proximal
Rr551769	regulatory region 551769	277 bp proximal
Tssr404	transcription start site region 404	100 bp downstream
Tssr405	transcription start site region 405	295 bp upstream
Tssr406	transcription start site region 406	318 bp upstream
Tssr22607	transcription start site region 22607	58 bp downstream
Tssr22608	transcription start site region 22608	78 bp downstream
Tssr22609	transcription start site region 22609	882 bp downstream