rs247472992 SNP Detail

Summary

• ID
  rs247472992
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCCACTC TCCATATTTT
  AAAAATGTAT CCAACTCCCT CCACATTCTG TCAGAGGTTC AAGATGCATC CTCTGGGTGG
  GGGTATTATC AGGTTCTAGG GTTGTAGCAG ACATGAAGAT TACAATTGTT CGTAAGTTCA
  AAGCTTCCCG TACTCCAGAT GGAGTCAAGT TCCGGAAAAC AAAACAAAAC AAAACAAAAA
  M
  CAACAACAAT AAAACACTTC AAGAGAAGAG GTCGTGTTTC TCCGCTGTCC CGGTTGCAGT
  CCAGGGAGCA AGTCAGGGCT CCCCCGGAGC TCGGGCGTGA AGAAAACTCG AGAAAAGGCA
  CACGGAGTCC CTCTCGGATG ACCATTTACA ATCAGATGCA AGGCCAGCAG CGCCCTTCCC
  ACGCCAGCCG GCGCCCGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111987	CHEV_1_172574294	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247472992					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	7 bp proximal
Olfml2b	olfactomedin-like 2B	369 bp upstream
Rr14047	regulatory region 14047	1532 bp distal
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	181 bp downstream
Tssr9927	transcription start site region 9927	1312 bp downstream
Tssr9928	transcription start site region 9928	286 bp upstream
Tssr9929	transcription start site region 9929	327 bp upstream
Tssr9930	transcription start site region 9930	360 bp upstream
Tssr9931	transcription start site region 9931	409 bp upstream
Tssr9932	transcription start site region 9932	426 bp upstream
Tssr9933	transcription start site region 9933	622 bp upstream
Tssr14922	transcription start site region 14922	165 bp downstream
Tssr14923	transcription start site region 14923	216 bp downstream