rs247481288 SNP Detail

Summary

• ID
  rs247481288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30115109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACATGG AGAGAGGGAG
  GAAGGGAACT GGGAGTAAGT AGGCAAGAGG CAAGAGAGTA AGAAGGTAAA TAAATCTTTA
  AAAAAAATTG TCCCAGTCCC CAGCTTAGTC CTTCTTCACA CCATATGTCA CTCTCTATCC
  CTCTCTAGGG ACCCGGAAAC AACACATTGC TGAGACTGAG TCGCCTTATC AGGTAAGAAC
  R
  CCAAATTCTT CTCCACCCTT GCTCCTGCCC CGTCCTGGCT ATCCCCCTCC CCAGTACAGA
  CACACAGACA AACACACACA CACAAATACA CAGAGACATA TATAAACACA CTCACATAAA
  TAAACACACA CACATACCTA CACACACACA CACACATACC TACACACACA CACACACACA
  CACACACACA CACACACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906698	MGP_WTSI_7_31200703	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247481288					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906698	MGP_WTSI_7_31200703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30115109 () rs orientation: forward

Symbol	Name	Function Class
Gm32029	predicted gene, 32029	1963 bp upstream
Rr155980	regulatory region 155980	509 bp distal
Rr167464	regulatory region 167464	908 bp distal
Rr167465	regulatory region 167465	508 bp distal
Tssr65703	transcription start site region 65703	1853 bp downstream
Tssr65704	transcription start site region 65704	1313 bp downstream
Tssr65705	transcription start site region 65705	1098 bp downstream
Tssr65706	transcription start site region 65706	150 bp downstream
Tssr65707	transcription start site region 65707	26 bp upstream
Tssr65708	transcription start site region 65708	1650 bp upstream
Tssr65709	transcription start site region 65709	1705 bp upstream
Tssr71737	transcription start site region 71737	1990 bp upstream
Tssr71738	transcription start site region 71738	1699 bp downstream
Tssr71739	transcription start site region 71739	1779 bp downstream
Tssr71740	transcription start site region 71740	1886 bp downstream
Tyrobp	TYRO protein tyrosine kinase binding protein	within coordinates