rs247486644 SNP Detail

Summary

• ID
  rs247486644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCAGGC GACCCCGCGC
  CGCCAGCTCG GTGCAGAGCG CGGGGAGGGC AGAGGGGCGT GCACAGTACC GGGGTGGGAG
  GGAGGGCCCA CTCTCCTGTC TCTTTATTAA TATGGCGGGC TTAGGCCTGC AGAGCCAACG
  TGCCGGAGCT CCGGGCGCAG ACAGTCGCCT TCACCAACAT GGCGGCCACA CCCGCTCCCC
  K
  CCCTCCCCTA CCTCCCGGGG TCCCAAAGAG ACTAGGTCCA GCGTCTCAGA CGGGGGCCCC
  CTAGCAATGA ATGAGAAGAT GGCAGATGTC TTCCCCACCG ACTAATGACT CTGAAACTCA
  GGTCTGCGGC TGAAAGAGCA TGTCCGCAAC CCAGACACTA ACCCCTTCCT TCCCCGCCTG
  CCACCTCGGA CGGGATGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484723	CHEV_10_114821617	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247486644					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	167 bp upstream
Rr439213	regulatory region 439213	162 bp distal
Rr439214	regulatory region 439214	247 bp distal
Rr439215	regulatory region 439215	within coordinates
Rr439216	regulatory region 439216	398 bp proximal
Rr439217	regulatory region 439217	661 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	126 bp upstream
Tssr95813	transcription start site region 95813	611 bp downstream
Tssr95814	transcription start site region 95814	360 bp upstream
Tssr95815	transcription start site region 95815	390 bp upstream
Tssr95816	transcription start site region 95816	484 bp upstream
Tssr99330	transcription start site region 99330	225 bp upstream
Tssr99331	transcription start site region 99331	186 bp upstream
Tssr99332	transcription start site region 99332	126 bp upstream
Tssr99333	transcription start site region 99333	52 bp upstream
Tssr99334	transcription start site region 99334	within coordinates
Tssr99335	transcription start site region 99335	190 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	398 bp upstream