rs247490640 SNP Detail

Summary

• ID
  rs247490640
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89388641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACC CATTAGGCTA TCGTGCCAGC
  G
  CTAGGTTTGT TTGGAAGCTT TCAGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322766503	CHEV_8_91185912	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247490640					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89388641 () rs orientation: forward

Symbol	Name	Function Class
Gm64159	predicted gene, 64159	within coordinates
Nod2	nucleotide-binding oligomerization domain containing 2	within coordinates
Rr190931	regulatory region 190931	within coordinates
Rr401049	regulatory region 401049	355 bp upstream
Tssr78663	transcription start site region 78663	1986 bp downstream
Tssr78664	transcription start site region 78664	538 bp upstream
Tssr82363	transcription start site region 82363	348 bp downstream
Tssr82364	transcription start site region 82364	360 bp downstream