rs247496725 SNP Detail

Summary

• ID
  rs247496725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77970074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGAAGG AGGCCCGGGG
  GAACGGGCAC CCTCTCTCAG TGGTGCAGCG TTTAAAACTA CCTTTGTTCT TAGCTGGAAG
  CTGTAGAAGC ATCTGATTGG ACTTGCTCAT TTTCACAGAT GGGAAAGTGA GACCCAGCAG
  GGTGAGATCA GTTTCCTTAC AATTCTGATG GCCAATGAGA GGCAGAACCA GAGCTAGAGC
  R
  CAACTTTCTG GCACAGGGCT GTTCTAGCCG TTTGTGTGGC TGCCATGCTC CTGTGGGCTG
  AATGAGGGTG TAAAGATTCT GTGCAAGCCT GATGGCCCGT GTTCCATCCC TGGGACCCAC
  ACATGTGTGG GGTTCCTCTG GCCTCCACAC ATGTGCATAG CAGTGACTGA CACATGCACA
  GGCAGACAGA CACACAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401317889	MGP_WTSI_18_78121113	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247496725					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401317889	MGP_WTSI_18_78121113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77970074 () rs orientation: forward

Symbol	Name	Function Class
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541210	regulatory region 541210	648 bp proximal
Tssr152066	transcription start site region 152066	170 bp downstream
Tssr152067	transcription start site region 152067	142 bp downstream
Tssr152068	transcription start site region 152068	113 bp downstream
Tssr152069	transcription start site region 152069	12 bp downstream
Tssr152070	transcription start site region 152070	92 bp upstream
Tssr152071	transcription start site region 152071	123 bp upstream
Tssr152072	transcription start site region 152072	144 bp upstream
Tssr152073	transcription start site region 152073	177 bp upstream
Tssr152074	transcription start site region 152074	206 bp upstream
Tssr152075	transcription start site region 152075	226 bp upstream