rs247499518 SNP Detail

Summary

• ID
  rs247499518
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23717599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGACTAT GGGCAATATT
  AAAAGTATTG AAGGTTGGAG CTAGAGGTGC CTTGATGGTA GTTTACTGCT TTTGCAGAGG
  ACCAGAGTTC AGTGCTCACT ATCTATTTGG GTGGCTCACA CCAGTTCCAG AGGATCTATA
  CATACAAAGA CATGCACATA CTTAAAAATA ACTCTTTAAG AGAAAGTATT AAAATTAAGA
  S
  AACAGTTCTC TGTATAATTT TAAATATAGT CTTCAGCCTA CTCAAATACT AGGCTGAATG
  CAACCCAGAC GCTATTGTCT CACAAAGGAG CAAGTTTTCC CTTTTATTTA GTCTTTTCCT
  AATTAATTCT TGCTGTCCTT CTGGGCCTTA GTAACGGACT TCTTGGAGCC CTTCTTCAGG
  GCGGGAGCGG ACTTGGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289719	CHEV_13_23625298	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247499518					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23717599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	1555 bp distal
Cpgi5359	CpG island 5359	1728 bp proximal
Gm55640	predicted gene, 55640	685 bp downstream
Gm60769	predicted gene, 60769	92 bp downstream
H2ac10	H2A clustered histone 10	477 bp upstream
H3c8	H3 clustered histone 8	1989 bp upstream
H4c8	H4 clustered histone 8	1951 bp downstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	212 bp upstream
Rr403648	regulatory region 403648	1707 bp upstream
Tssr4007	transcription start site region 4007	256 bp downstream
Tssr118827	transcription start site region 118827	1576 bp downstream
Tssr118828	transcription start site region 118828	440 bp upstream
Tssr118829	transcription start site region 118829	1982 bp upstream
Tssr121712	transcription start site region 121712	227 bp downstream
Tssr121713	transcription start site region 121713	1736 bp downstream