rs247499544 SNP Detail

Summary

• ID
  rs247499544
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57008831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA CCTCCCACGG CCTTGGCCAC
  S
  GCGCCGTTGG GCCTCCCGCG GGCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319733551	CHEV_1_57026516	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247499544					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57008831 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	1797 bp upstream
Cpgi267	CpG island 267	within coordinates
Cpgi268	CpG island 268	1157 bp proximal
Cpgi269	CpG island 269	1790 bp proximal
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	1779 bp upstream
Tssr11745	transcription start site region 11745	155 bp downstream
Tssr11746	transcription start site region 11746	192 bp downstream
Tssr11747	transcription start site region 11747	1595 bp downstream
Tssr11748	transcription start site region 11748	1609 bp downstream
Tssr11749	transcription start site region 11749	1641 bp downstream
Tssr11750	transcription start site region 11750	1666 bp downstream