rs247499728 SNP Detail

Summary

• ID
  rs247499728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173420522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGGCCA CGCTGGAACA GGCAGAGGCT
  TGGGTGGAAA TGGCATCAAA CCCGTGTGCC CTGACGTTGT GACATCCTCG GAGGGAGAAA
  AGTATGGAAC ACATCTGATG GGAAGGCTAG GCTTAAACCT TTTCAGGGGA AGCTCAAACC
  K
  CAGGGTTGGG AGGGTGTAGG CCCTCAAATA CCACCAGACC CAAAGCAAGG CCTTTAGGGG
  CTAGAGGAAG CACCATGGAA CGGGCAGGGA GCCAGAACGC CCTTCAAAAA CTCTGTTGTT
  ACCACGAACA AAATAGAAGC TTGAAAAATA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625291	CHEV_2_173404230	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247499728					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173420522 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	456 bp upstream
Cpgi12846	CpG island 12846	within coordinates
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	within coordinates
Rr571985	regulatory region 571985	780 bp distal
Rr571986	regulatory region 571986	within coordinates
Tssr27995	transcription start site region 27995	549 bp upstream
Tssr27996	transcription start site region 27996	530 bp upstream
Tssr27997	transcription start site region 27997	518 bp upstream
Tssr27998	transcription start site region 27998	451 bp upstream
Tssr27999	transcription start site region 27999	395 bp upstream