rs247515755 SNP Detail

Summary

• ID
  rs247515755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTCTGG GCTTACGTTC
  TACCATCCAC CCAGCCTTGC GCCCAGCCCC ACATGTCAGA TTCTAGAACA GAGAAACATT
  TTGTTGTTGT TTTGAGACAG AGGTCTCAGG TAGTCCAGGT TGGCCTCTCA CTTCGTTTAT
  AGATGAGTCT GGCCTTAACA CCTGACCCTC TGCCACCACC TCGCTGGGAT TGCAGGGGTG
  Y
  GCCTCTACTC CTAGTTAAAA CAGAGATATT GGGAACCTGG AAATGCCTTT TCGGGAAGTT
  GAGATTAGCA AACCCCAGTC CTCCACTCCT AGTGTTAGGA CCTGGTCGCC TAGGTTGGGA
  TTTTTAACGG ATGTGGTGGT GCTTCCGAGG AGCCCGGTGT CTCCGGAGAA GATAGATGCT
  TCAGAGAAGT GCTAGCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906870	MGP_WTSI_7_31207975	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247515755					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906870	MGP_WTSI_7_31207975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	148 bp distal
Cpgi18800	CpG island 18800	138 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1102 bp downstream
Rr400240	regulatory region 400240	523 bp downstream
Rr644814	regulatory region 644814	1214 bp distal
Rr644815	regulatory region 644815	540 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	388 bp upstream
Tssr65714	transcription start site region 65714	1214 bp downstream
Tssr65715	transcription start site region 65715	661 bp downstream
Tssr65716	transcription start site region 65716	525 bp downstream
Tssr65717	transcription start site region 65717	512 bp downstream
Tssr65718	transcription start site region 65718	486 bp downstream
Tssr65719	transcription start site region 65719	310 bp upstream
Tssr65720	transcription start site region 65720	349 bp upstream
Tssr65721	transcription start site region 65721	406 bp upstream
Tssr65722	transcription start site region 65722	425 bp upstream
Tssr65723	transcription start site region 65723	456 bp upstream
Tssr65724	transcription start site region 65724	472 bp upstream
Tssr65725	transcription start site region 65725	644 bp upstream
Tssr65726	transcription start site region 65726	651 bp upstream
Tssr65727	transcription start site region 65727	669 bp upstream
Tssr65728	transcription start site region 65728	964 bp upstream
Tssr65729	transcription start site region 65729	1282 bp upstream
Tssr65730	transcription start site region 65730	1330 bp upstream
Tssr65731	transcription start site region 65731	1356 bp upstream
Tssr65732	transcription start site region 65732	1394 bp upstream
Tssr65733	transcription start site region 65733	1422 bp upstream
Tssr65734	transcription start site region 65734	1463 bp upstream
Tssr71745	transcription start site region 71745	1320 bp upstream