rs247520922 SNP Detail

Summary

• ID
  rs247520922
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138116288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTCAG TGCTGTAATT
  ACAGGTATGC ACCACCACGA CTTCAGCTTG GAGTTTCCAA GTGCAGAGTG TCTTAAGGGC
  ATTATCTACT ACAAGGTAAT AATTGCTGTT CATTTGATGC AATCTGTGAT AGTTTGATTT
  GTTTACACTT CGTCTTGCAC AGAATGAATT TGAGGCTGAT TAAGGGAGTG TGTGTGTGTG
  K
  GGGGGGGACT TATAAACTGT AGAATTCGCA TAAAGGAGGG AAAAATTGGG AAGTGACCAA
  AAGCCTGCTG CTAGACTTCG AGAGTTAGGT TTTTATTTTT TTACTCTGTG TGTGTGTGTG
  TGTGTGTGAG TCAAAGGATA GTTGGCATAG TTGACTGCTT CCCTTCCATT ACATGGACAC
  CAGTCTCAAA ACAGGCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321703442	CHEV_5_138559254	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247520922					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138116288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	745 bp distal
Gm71396	predicted gene, 71396	1228 bp downstream
Rr399441	regulatory region 399441	901 bp downstream
Rr623030	regulatory region 623030	975 bp distal
Rr623031	regulatory region 623031	78 bp distal
Rr623032	regulatory region 623032	371 bp proximal
Tssr49413	transcription start site region 49413	1040 bp downstream
Tssr54072	transcription start site region 54072	1158 bp upstream
Zscan21	zinc finger and SCAN domain containing 21	within coordinates