rs247522410 SNP Detail

Summary

• ID
  rs247522410
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:46345353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCTCCA ACTAGCTCTA
  CGAGTCCCCT TTCTTCGACA TAAAGAAAAG GCAGCCACGG TGCATTGTGT GCAGCTGGGA
  TGCGCTAGTG CGGAGCACAG ACCCGATTCC AGCTTGTGTG CCCCCAGCAC GGGACCGCTC
  CGATGCCGCA GCCCACCCTC AGGTCCTGAG TGCCCAGCCG GGACCACGGA CACAGCCCCA
  M
  AGCGGAGATG CTTACCTTGC CCTTGGCAAG CAATTCCATA ATGTAGCCAA ATTCACTTAT
  CTCCTCTGAT TCCGACATGG TCAAGACCCT TTAGGAACTC TAGACCAGCC AGACGGGCTC
  ATCGAATGTG GTCCTTTCCC CGCCTTTCTC TCTGTTCAGC GTGAGTTTGC CCAGCCCTCC
  TCCAGAGGCA CGGTTAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609390	CHEV_18_46371940	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247522410					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46345353 () rs orientation: forward

Symbol	Name	Function Class
Rr537294	regulatory region 537294	within coordinates
Rr537295	regulatory region 537295	311 bp proximal
Trim36	tripartite motif-containing 36	Intron
Tssr153216	transcription start site region 153216	165 bp downstream
Tssr153217	transcription start site region 153217	283 bp downstream
Tssr153218	transcription start site region 153218	309 bp downstream
Tssr153219	transcription start site region 153219	527 bp downstream