rs247536930 SNP Detail

Summary

• ID
  rs247536930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115056098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAAGAT CCTCCCTCCA
  CAGGGAAAGG GCACTGTTCA GCCCCGTAAG GTTGAAGGCG GAGCCTGAGA GTACCAACTG
  GTTTGGTGGA AGTGAGGTCA CCAGAAGCCC GGTTCTGCCA GAGTTTGACT CTGGGAATGC
  CAGGGCCACC AAGTTCCCAC TTCCTGCCAG TGCCAAATTG GCATCGGTAA GCAGTAGTAG
  W
  GCCCCTGGCA GCAAGTTGGA ACAGGTGACC TCTGCTCTTA GGCACAAACC CAATTTGAAC
  TTTGTGCCCT GTCCATTGAT TCACCATTCA TCCCCCACCC CCATCCCCAC CCTTCCACCA
  CCACCCCCTC CGCTCCCGCC CCCGCCTCCC ATTCTTTCCT TTGGACTTTA GCACCAGCAC
  AGATAGCCAG CAGCCTCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822793	MGP_WTSI_11_115026586	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247536930					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822793	MGP_WTSI_11_115026586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115056098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	943 bp distal
Cpgi4110	CpG island 4110	138 bp distal
Gm72084	predicted gene, 72084	950 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr403111	regulatory region 403111	1909 bp downstream
Rr459783	regulatory region 459783	1921 bp distal
Rr459784	regulatory region 459784	460 bp distal
Rr459785	regulatory region 459785	682 bp distal
Rr459786	regulatory region 459786	1589 bp proximal
Tssr3727	transcription start site region 3727	1901 bp downstream
Tssr105840	transcription start site region 105840	1924 bp downstream
Tssr105841	transcription start site region 105841	1889 bp downstream
Tssr105842	transcription start site region 105842	1859 bp downstream
Tssr105843	transcription start site region 105843	1853 bp downstream
Tssr105844	transcription start site region 105844	1823 bp downstream