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rs247547815 SNP Detail
Summary
  • ID
    rs247547815
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    ChrX:72538765 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTCCCCTCA ACCTTTGAAA
TTTAACATTC ATCAACCATG TCCACTCAGA GACTCCCTAT AAATCTTTCT TCTTGCTCAT
CCTGAAACTC AGATGTTTTT GGCAAGAGGG GCTAGGAAAG ATGGATAGAG CACACTGCCA
CCGCCATTGT TCCATCCAGG CATGTGTTCC TCCTCTTCCT TGCTCATGTC TGACTTCCAG
M
TCTCCTGGGC TCTGCTTGCT GCCCTTATCC TCTGGTGTTC TCTCTTCAAC AAGTTCACTA
CCTGTCAATC CCAGCTACAA CCTGGCTGTA CTAACTCCTG GATCTTTCCC TCTCTCCAAC
CCTGTTATGC TTCCTGACAC TTTTCTTCCT TCTGGAGTTA TTGACCTGTC CCCTTCCATC
TCTGGACCTA GGTCATATTT                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403771592 MGP_WTSI_X_70740498 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247547815 SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403771592 MGP_WTSI_X_70740498 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:72538765 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Bgn biglycan within coordinates
Rr4565 regulatory region 4565 1165 bp distal
Rr6090 regulatory region 6090 1765 bp distal
Rr7747 regulatory region 7747 28 bp distal
Rr10758 regulatory region 10758 1238 bp distal
Tssr5633 transcription start site region 5633 1882 bp downstream
Tssr5634 transcription start site region 5634 438 bp upstream
Tssr5635 transcription start site region 5635 95 bp upstream
Tssr161225 transcription start site region 161225 1945 bp downstream
Tssr161226 transcription start site region 161226 1894 bp downstream
Tssr161227 transcription start site region 161227 1844 bp downstream
Tssr161228 transcription start site region 161228 550 bp downstream
Tssr161229 transcription start site region 161229 517 bp downstream
Tssr161230 transcription start site region 161230 493 bp downstream
Tssr161231 transcription start site region 161231 468 bp downstream
Tssr161232 transcription start site region 161232 423 bp downstream
Tssr161233 transcription start site region 161233 349 bp downstream
Tssr161234 transcription start site region 161234 325 bp downstream
Tssr161235 transcription start site region 161235 243 bp downstream
Tssr161236 transcription start site region 161236 196 bp downstream
Tssr161237 transcription start site region 161237 171 bp downstream
Tssr161238 transcription start site region 161238 135 bp downstream
Tssr161239 transcription start site region 161239 84 bp downstream
Tssr161240 transcription start site region 161240 50 bp downstream
Tssr161241 transcription start site region 161241 27 bp downstream
Tssr161242 transcription start site region 161242 within coordinates
Tssr161243 transcription start site region 161243 150 bp upstream
Tssr161244 transcription start site region 161244 174 bp upstream
Tssr161245 transcription start site region 161245 269 bp upstream
Tssr161246 transcription start site region 161246 425 bp upstream
Tssr161247 transcription start site region 161247 448 bp upstream
Tssr161248 transcription start site region 161248 717 bp upstream
Tssr163547 transcription start site region 163547 482 bp upstream
Tssr163548 transcription start site region 163548 410 bp upstream
Tssr163549 transcription start site region 163549 344 bp upstream
Tssr163550 transcription start site region 163550 281 bp upstream
Tssr163551 transcription start site region 163551 123 bp upstream
Tssr163552 transcription start site region 163552 61 bp upstream
Tssr163553 transcription start site region 163553 within coordinates
Tssr163554 transcription start site region 163554 13 bp downstream
Tssr163555 transcription start site region 163555 40 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory