rs247550658 SNP Detail

Summary

• ID
  rs247550658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172116703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGACTTC CGTACTCCTA ACAGTTGGGG
  GAGGGGGCAT CCTGACTCAC CATCTGAGTG TTTTGTGGAA GGCTTTCAGC CTGGGGATCA
  ACAGAACTGA GAGCTTCCTG TAGAGAGGTG ATTTCCAGCA GAGTCAGTCT GCCCTTGGCC
  M
  GTGCCCTTGG CCCTGTTCTC CAGAGATGAC TACTACCGCA ACGTTCAGTT CCCTCAATGC
  CCTTTATATG CGGAGCTTTA GCCAAATAAG TACAGTTTCA GGAGTCAGCC CCTTCCCTGC
  ACTATGCTGG GGTGAGGAGC TTTCTTGGGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320123901	CHEV_1_174219267	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247550658					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172116703 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	within coordinates
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	251 bp downstream