rs247552000 SNP Detail

Summary

• ID
  rs247552000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44509966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCCATTTTTC TTCTTGGAGT CTCCTCTTAT TTCTCCTATC TGGTTCTTTA
  CTCTCTCCTC TCTCCACTTC TTAGCCTTCA GTTTTTCTCA GTCTGCCTGT AGAATAGTGA
  TTTCCAACTT TAATTTTCAC ATCTCCTAAA AGCCACCCTC ATCCACTGTC ACCTTGGCCT
  Y
  CCCCAGTCCC TCTCCCACTC TCCAGATCCT ACACTGAGTG ATTTGGAGGC CATGCTCTTG
  GAGACCAACT TGAGGAACTT CCCTGGACAC ACCCAGTGCC CTGTCCAGGG GCTCCTAGTC
  CCAAGTGAGA AATGGTACCT TGCCCTTTTC ATTGCTGGCC ACCACCTGGG CTTCGGGGAA
  AACTTTGTGG GCCCAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201286	MGP_WTSI_11_44432641	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247552000					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201286	MGP_WTSI_11_44432641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44509966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	1836 bp distal
Cpgi2763	CpG island 2763	510 bp distal
Cpgi2764	CpG island 2764	633 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	342 bp proximal
Ebf1	early B cell factor 1	within coordinates
Rr369170	regulatory region 369170	1826 bp downstream
Rr445653	regulatory region 445653	1812 bp distal
Rr445654	regulatory region 445654	423 bp distal
Tssr3469	transcription start site region 3469	1678 bp upstream
Tssr101029	transcription start site region 101029	1837 bp downstream
Tssr101030	transcription start site region 101030	1803 bp downstream
Tssr101031	transcription start site region 101031	1778 bp downstream
Tssr101032	transcription start site region 101032	1742 bp downstream
Tssr101033	transcription start site region 101033	1626 bp downstream
Tssr101034	transcription start site region 101034	1596 bp downstream
Tssr101035	transcription start site region 101035	1581 bp downstream
Tssr101036	transcription start site region 101036	1509 bp downstream
Tssr101037	transcription start site region 101037	1479 bp downstream
Tssr101038	transcription start site region 101038	1436 bp downstream
Tssr101039	transcription start site region 101039	1252 bp downstream
Tssr101040	transcription start site region 101040	1204 bp downstream
Tssr101041	transcription start site region 101041	1004 bp downstream
Tssr101042	transcription start site region 101042	935 bp downstream
Tssr101043	transcription start site region 101043	916 bp downstream
Tssr101044	transcription start site region 101044	548 bp downstream
Tssr107570	transcription start site region 107570	1070 bp upstream