rs247554163 SNP Detail

Summary

• ID
  rs247554163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101276215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAGATT AGGTCTCAAT
  AAGTAAGTAA TAAGTTCAGG CCCGCCCACA ACTTTCTACT CTTGCCAGGG CCTGCAGTGA
  ACACTGGTGT AAACCACCCT GGTTTAAGGG ACAGTCTCAG GCGTTTTGAT TCCCTCACAG
  GGATTAAAAC AAAGAGATCT CCACTTTACA CTGCTAAGTA TATGAACGAA TGGTGCGTAC
  R
  TATTCCAAGC CTTCCTCCAT CGGTACCTGT AAAGGTTGCA TAATAAAATC ACACAGCCTA
  GAATTGGACA CAGGGTAGGC GCTCAACAAG TTGTGTTTTT CCTTCCCCTT GACAATAGAC
  CGGGTCCCCA GGCGGTTCCT TTCTCTCTGG GCGTCTTCAT CTCCGTTCGC CCCCGCAGCC
  TCAGCCTGGC TCCGGACACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362614054	MGP_WTSI_4_101091623	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247554163					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362614054	MGP_WTSI_4_101091623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101276215 () rs orientation: forward

Symbol	Name	Function Class
Ak4	adenylate kinase 4	mRNA-UTR
Cpgi14500	CpG island 14500	41 bp proximal
Gm69573	predicted gene, 69573	within coordinates
Rr596144	regulatory region 596144	1874 bp distal
Rr596145	regulatory region 596145	within coordinates
Rr596146	regulatory region 596146	298 bp proximal
Rr596147	regulatory region 596147	1469 bp proximal
Tssr37989	transcription start site region 37989	283 bp upstream
Tssr37990	transcription start site region 37990	317 bp upstream
Tssr37991	transcription start site region 37991	341 bp upstream
Tssr37992	transcription start site region 37992	678 bp upstream
Tssr37993	transcription start site region 37993	1135 bp upstream