rs247556078 SNP Detail

Summary

• ID
  rs247556078
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131567545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atatattat atacacatat tatacattat
  atattatatg tgcactagta tatacattgt atataatata caatatattc tatttattta
  tatataatat atttttacat tatatactct atatatatat atatatatat atatatatat
  W
  agatttatgt tgtttctttc aagaaacata aggaaaaaat gttagactca aaacagaaaa
  tgaaaaatct gtctggggaa agaagtgaaa taaaactatt tgaattattg actaaatgaa
  gggaacaaga tagactgtgc aaagaaagta                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974776	CHEV_1_133536384	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247556078					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131567545 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr28482	regulatory region 28482	144 bp distal
Rr366988	regulatory region 366988	1410 bp downstream
Tssr8635	transcription start site region 8635	1511 bp downstream
Tssr8636	transcription start site region 8636	1469 bp downstream
Tssr8637	transcription start site region 8637	1444 bp downstream
Tssr8638	transcription start site region 8638	1403 bp downstream
Tssr8639	transcription start site region 8639	1323 bp downstream
Tssr8640	transcription start site region 8640	1311 bp downstream