rs247564390 SNP Detail

Summary

• ID
  rs247564390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102334887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTATCAGGC TGAgtaccag acatggcttt
  gtgcacttta catggataat tggtattcca taacctggga cagaaactgt tactgatctc
  attttatagg tgaTTGATTG GCCCAGGTTT CCAATATTCT ACTTCGGGAA AATCACCCAT
  Y
  TTCCCCAGCT TCAGGGTAGA GGACAAATTC AAAAGCAGAG AGGAAGAAAC CACTGTGTTG
  AGTCTGGCAG AAGGGCGTTT TGTAGGAACG AGAGCAGAAG CCTGTAGGAC TGAGATCAGG
  TCGTCCTCAG GTTGTTACTC CTTCTTGCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322357779	CHEV_7_109834194	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247564390					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102334887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	1294 bp proximal
Gm45527	predicted gene 45527	within coordinates
Rr652623	regulatory region 652623	961 bp proximal
Rr652624	regulatory region 652624	1580 bp proximal
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	1572 bp downstream